PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009762040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 183aa    MW: 20586.5 Da    PI: 8.34
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009762040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer538.2e-175594240
     ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaa 40
                    + ++YkeCl NhAa++Gg+a+DGCgEfmps +e  ++ ++
  XP_009762040.1 55 KMMKYKECLENHAAAMGGNATDGCGEFMPSGEEGiNQEDG 94
                    5789*************************95554445555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-135790IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-115788IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-155888IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.29859110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.14E-16109168IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-26110170IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-24114168IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEVPNEEGEM AMPINSAYGH GHMIHHDPAP QNNHIIPSSQ IITSKNGPPI SSNKKMMKYK  60
ECLENHAAAM GGNATDGCGE FMPSGEEGIN QEDGIINGGC GVMARPLNYQ QLVKKRFRTK  120
FSQEQKEKML NFAEKIGWKM QKQEEAMVQQ FCQQVGVKRR LLKVWMHNLA KKNSNDINTE  180
SQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211151681871ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009762040.11e-136PREDICTED: zinc-finger homeodomain protein 3-like isoform X2
SwissprotQ9SB619e-32ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLA0A067L8R92e-53A0A067L8R9_JATCU; Uncharacterized protein
TrEMBLM0RZI81e-53M0RZI8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P13300_0013e-53(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.15e-33homeobox protein 22